Schoener, G., Stone, M. C., & Thomas, C. (2021). Comparison of Seven Simple Loss Models for Runoff Prediction at the Plot, Hillslope and Catchment Scale in the Semiarid Southwestern US. Journal of Hydrology, 126490.

Jaramillo, L. V., Stone, M. C., & Benson, M. H. (2021). Developing Factors for Socio-Ecohydrological Resilience. In Handbook of Disaster Risk Reduction for Resilience (pp. 387-416). Springer.

Schoener, G., & Stone, M. C. (2020). Monitoring soil moisture at the catchment scale–a novel approach combining antecedent precipitation index and radar-derived rainfall data. Journal of Hydrology, 125155.

Summers, B. M., Horn, D. J. V., González-Pinzón, R., Bixby, R. J., Grace, M. R., Sherson, L. R., … & Dahm, C. N. (2020). Long-term data reveal highly-variable metabolism and transitions in trophic status in a montane stream. Freshwater Science39(2), 000-000.

Chen, X., Chen, L., Stone, M. C., & Acharya, K. (2020). Assessing Connectivity between the River Channel and Floodplains during High Flows Using Hydrodynamic Modeling and Particle Tracking Analysis. Journal of Hydrology, 124609.

Gregory, A., Chen, C., Wu, R., Miller, S., Ahmad, S., Anderson, J. W., Stone, M.C.. (2020). Efficient Model-data Integration for Flexible Modeling, Parameter Analysis & Visualization, and Data Management. Frontiers in Water2, 2.

Byrne, C. F., Stone, M. C., & Morrison, R. R. (2019). Scalable flux metrics at the channel‐floodplain interface as indicators of lateral surface connectivity during flood events. Water Resources Research55(11), 9788-9807.

Schoener, G., & Stone, M. C. (2019). Impact of antecedent soil moisture on runoff from a semiarid catchment. Journal of Hydrology569, 627-636.

Jaramillo, L.V., Stone, M.C., and Morrison, R. R.  2018. An Indicator-Based Approach to Assessing Resilience of Socio-Hydrologic Systems in Nepal to Hydropower Development. Journal of Hydrology, 563:1111:1118.

Gregory, A., Morrison, R.R., and M.C. Stone. 2018. Assessing the Hydrogeomorphic Effects of Environmental Flows using Hydrodynamic Modeling. Environmental Management, 62:352-364.

Benson, M.H, Morrison, R.R., Llewellyn, D, and M.C. Stone. 2018. Governing the Rio Grande: Challenges and Opportunities for New Mexico’s Water Supply. Water Governance, 2018:99-114.

Stone, M.C., Byrne, C.F., and R.R. Morrison. 2017. Evaluating the Impacts of Hydrologic Alterations on Floodplain Connectivity. Ecohydrology, 10(5).

Gunderson, L., Cosens, B.A., Fremier, A.K., Stone, M.C., and M.H. Benson. 2018. Regime shifts and panarchies in regional scale social-ecological water systems. Ecology and Society, 22(1):1-31.

Byrne, C.F., Stormont, J.C., and M.C. Stone. 2017. Soil Water Balance Dynamics on Reclaimed Mine Land in the Southwestern United States. Journal of Arid Environments, 136:28-37.

Benson, M.H., Lippitt, C.D., Cosens, B., Stone, M.C., and V. Valentine. 2016. Five ways to support interdisciplinary work before tenure. Journal of Environmental Studies and Sciences, 6(2):260-267.

Harm Benson, M., Llewellyn, D, Morrison, R.R. and M.C. Stone. 2015. Water Governance Challenges in New Mexico’s Middle Rio Grande Valley: A Resilience Assessment. Idaho Law Review, 51:195.

Morrison, R.R. and M.C. Stone. 2015. Evaluating the Impacts of Environmental Flow Alternatives on Reservoir and Recreational Operations Using System Dynamics Modeling. Journal of the American Water Resources Association, 51. (2015): 33-46, DOI: 10.111/jawR.2231.

Morrison, R.R. and M.C. Stone. 2015. Investigating Environmental Flows for Riparian Vegetation Recruitment Using System Dynamics Modelling. River Research and Applications, 31.4: 485-496, DOI: 10.002/rra.2758.

Morrison, R.R. and M.C. Stone. 2014. Spatially Implemented Bayesian Network Model to Assess Environmental Impacts of Water Management. Water Resources Research, 50(10), 8107-8124, DOI: 10.002/2014WR015600.

Chen, L., Stone, M.C., and Acharya, K. 2014. Using a Mechanical Approach to Quantify Flow Resistance by Submerged, Flexible Vegetation – a revisit of Kouwen’s approach. Advances in Water Resources, 73:198-202. DOI: 10.016/j.advwatres.2014.08.014

Webb, R.W., Stormont, J.C., Stone, M.C., and B.M. Thomson. 2014. Characterizing the Unsaturated and Saturated Hydraulic Properties of Coal Combustion By-Products. Journal of The American Society of Mining and Reclamation, 3(1): 70-99.

Wang, Y., Chen, D., Wong, D. Stone, M.C.,  Wei, Q., Liu, X. and S. Feng. 2013. Environmental Factors Affecting Drift Flux of Hydropsychidae Larvae in the Upper Yangtze River, China. Environmental Management, Journal of Hydraulic Research, 51(1): 19-32.

Morrison, R.R., Stone, M.C. and D. Sada. 2013. Response of a Desert Springbrook to incremental Discharge Reductions, with Tipping Points of Non-Linear Environmental Change. Journal of Arid Environments, 99:5-13. DOI: 10.016/j.jaridenv.2013.09.002.

Benson, M.H, Morrison, R.R., and M.C. Stone. 2013. A Classification Framework for Running Adaptive Management Rapids. Society and Ecology, 18(3): 30. DOI: 10.5751/ES-05707-180330.

Naranjo, R., Niswonger, R., Pohl, G. and M.C. Stone. 2013. Using Heat as a Tracer to Estimate Spatially Distributed Mean Residence Times in the Hyporheic Zone of a Riffle-Pool Sequence. Water Resources Research, 49.6: 3697-3711. DOI: 10.002/wrcr.20306.

Chen, D., Acharya, K. and M.C. Stone. 2013. Closure to Sensitivity Analysis of Non-Equilibrium Adaptation Parameters for Modeling Mining-Pit Migration. Journal of Hydraulic Engineering, 139(7):801. DOI: 10.061/(ASCE)HY.943-7900.0000727.

Stone, M., Stormont, J., Epp, E., and C.F. Byrne1. 2013. Evaluation of Geomorphic Reclamation Performance and Models in the Southwestern United States. American Society of Mining and Reclamation, 366(1).

Almomani, F., Shawaqfah, M., and M.C. Stone. Evaluation of Anaerobic Digester Based Treatment and Biogas Production of Agricultural Solid Wastes. Journal of Environmental Protection, 4(04):309.

Naranjo, R., Niswonger, R., Pohl, G., Stone, M.C., Davis, C.  and W. McKay. 2012. The use of Multiobjective Calibration and Regional Sensitivity Analysis in Simulating Hyporheic Exchange. Water Resources Research, 48:W01538. DOI: 10.029/2011WR011179.

Zhu, J., Stone, M.C., and W. Forsee1. 2012. Analysis of Potential Impacts of Climate Change on Intensity–Duration–Frequency (IDF) Relationships for Six Regions in the United States. Journal of Water and Climate Change, 3(3):185-196. DOI: 10.2166/wcc.2012.045.

Stone, M.C., Goreham, J.O., McKay, K., Chen, L., and K. Acharya. 2011. Bending of Submerged Woody Riparian Vegetation as a Function of Hydraulic Flow Conditions. River Research and Applications, 9(2):195-205. DOI: 10.002/rra.592.

Chen, L., Stone, M.C., Acharya, K. and K. Steinhaus1. 2011. Mechanical Analysis for Emergent Vegetation in Flowing Fluids. Journal of Hydraulic Research, 49(6):766-774. DOI: 10.080/00221686.2011.621359.

Li, Y.2, Acharya, K., and M.C. Stone. 2011. Spatiotemporal Patterns in Nutrient Loads, Nutrient Concentrations, and Algal Biomass in Lake Taihu, China. Lake and Reservoir Management, 27(4):298-309. DOI:10.080/07438141.2011.610560.

Li, Y.2, Acharya, K., Stone, M.C., and D. Chen2. 2010. Modeling Water Ages and Thermal Structure of Lake Mead Under Changing Water Levels. Lake and Reservoir Management, 26:258-272. DOI: 10.080/07438141.2010.541326.

Chen, D., Stone, M.C., and Acharya, K. 2010. Sensitivity Analysis of Non-Equilibrium Adaptation Parameters for Modeling Mining-Pit Migration. Journal of Hydraulic Engineering, 136(10):806-811. DOI: 10.061/(ASCE)HY.943-7900.0000242.

Gautam, M.R.2, Acharya, K., and M.C. Stone. 2010. Best Management Practices for Stormwater Management in the Desert Southwest. Journal of Contemporary Water Research & Education, 146:39-49. DOI: DOI: 10.111/j.936-704X.2010.00390.x.

Chen, L, Goreham, J.O., and M.C. Stone. 2009. Impacts of Shear Stress on Saturated Hydraulic Conductivity of a Polyacrylamide Treated Soil. Environmental Water Resources, 2009(10).

Morrison, R.R., Hotchkiss, R.H., Stone, M.C., Thurman, D., and A.R. Horner-Devine. 2009. Turbulence Characteristics of Flow in a Spiral Corrugated Culvert Fitted with Baffles and Implications for Fish Passage. Ecological Engineering, 35(3):381-392. DOI: 10.016/j.ecoleng.2008.0.012.

Chen, L., and M.C. Stone. 2008. Influence of Bed Material Size Heterogeneity on Bedload Transport Uncertainty. Water Resources Research, 44(1):W01405. DOI: 10.029/2006WR005483.

Stone, M.C. and R.H. Hotchkiss. 2007. Evaluating Velocity Measurement Techniques in Shallow Streams. Journal of Hydraulic Research, 45(6): 752–762. DOI: 10.080/00221686.2007.9521813.

Stone, M.C. and R.H. Hotchkiss. 2007. Turbulence Descriptions in Two Cobble-Bed River Reaches. Journal of Hydraulic Engineering, 133(12): 1367–1378. 10.061/(ASCE)0733-9429.

Stone, M.C., Hotchkiss, R.H. and L.O. Mearns. 2003. Water Yield Responses to High and Low Spatial Resolution Climate Change Scenarios in the Missouri River Basin. Geophysical Research Letters, 30(4):1186. DOI: 10.029/2002GL016122.

Stone, M.C., Hotchkiss, R.H., Hubbard, C.M., Fontaine, T.A., Mearns, L.O. and J.G. Arnold. 2001. Impacts of Climate Change on Missouri River Basin Water Yield. Journal of the American Water Resources Association, 37(5):1119. DOI: 10.111/j.752-1688.2001.tb03626.

Hotchkiss, R.H., Jorgensen, S.F., Stone, M.C. and T.A. Fontaine. 2000. Regulated River Modeling for Climate Change Impact Assessment: The Missouri River. Journal of the American Water Resources Association, 36(2):375. DOI: 10.111/j.752-1688.2000.tb04275.